3NAL Hydrolase date Jun 02, 2010
title Sr Ca(2+)-Atpase In The Hne2 State Complexed With The Thapsi Derivative Dtb
authors A.M.L.Winther, Y.Sonntag, C.Olesen, J.V.Moller, P.Nissen
compound source
Molecule: Serca1a
Chain: A
Synonym: Sarcoplasmicendoplasmic Reticulum Calcium Atpase Isoform;
Ec: 3.6.3.8
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Tissue: Fast Twitch Skeletal Muscle
symmetry Space Group: P 41 21 2
R_factor 0.255 R_Free 0.283
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.330 71.330 591.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.65 Å
ligand DBK, K, MG enzyme Hydrolase E.C.3.6.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCritical roles of hydrophobicity and orientation of side chains for inactivation of sarcoplasmic reticulum Ca2+-ATPase with thapsigargin and thapsigargin analogues., Winther AM, Liu H, Sonntag Y, Olesen C, le Maire M, Sohoel H, Olsen CE, Christensen SB, Nissen P, Moller JV, J Biol Chem. 2010 Jun 15. PMID:20551329
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (162 Kb) [Save to disk]
  • Biological Unit Coordinates (3nal.pdb1.gz) 157 Kb
  • LPC: Ligand-Protein Contacts for 3NAL
  • CSU: Contacts of Structural Units for 3NAL
  • Structure Factors (342 Kb)
  • Retrieve 3NAL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NAL from S2C, [Save to disk]
  • Re-refined 3nal structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NAL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NAL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NAL, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nal] [3nal_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NAL: [Cation_ATPase_N ] by SMART
  • Other resources with information on 3NAL
  • Community annotation for 3NAL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science