3NCM Cell Adhesion Protein date Sep 21, 1998
title Neural Cell Adhesion Molecule, Module 2, Nmr, 20 Structures
authors P.H.Jensen, V.Soroka, N.K.Thomsen, V.Berezin, E.Bock, F.M.Poulsen
compound source
Molecule: Protein (Neural Cell Adhesion Molecule, Large Iso
Chain: A
Fragment: Module 2
Synonym: Ncam Module 2
Engineered: Yes
Mutation: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Norway Rat
Organism_taxid: 10116
Strain: Escherichia Coli Strain Top 10 F'
Expression_system: Pichia Pastoris
Expression_system_taxid: 4922
Expression_system_strain: His 4 Gs-115
Expression_system_plasmid: Phil-S1
methodSolution NMR
related structures by homologous chain: 1QZ1
Primary referenceStructure and interactions of NCAM modules 1 and 2, basic elements in neural cell adhesion., Jensen PH, Soroka V, Thomsen NK, Ralets I, Berezin V, Bock E, Poulsen FM, Nat Struct Biol 1999 May;6(5):486-93. PMID:10331878
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (489 Kb) [Save to disk]
  • Biological Unit Coordinates (3ncm.pdb1.gz) 25 Kb
  • CSU: Contacts of Structural Units for 3NCM
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 3NCM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NCM from S2C, [Save to disk]
  • View 3NCM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NCM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NCM, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d3ncma_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ncm] [3ncm_A]
  • SWISS-PROT database: [P13595]
  • Domain organization of [NCAM1_MOUSE] by SWISSPFAM
  • Domain found in 3NCM: [IGc2 ] by SMART
  • Other resources with information on 3NCM
  • Community annotation for 3NCM at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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