3ND6 Transferase date Jun 07, 2010
title Crystal Structure Of Phosphopantetheine Adenylyltransferase Complex With Atp From Enterococcus Faecalis
authors H.J.Yoon, H.H.Lee, S.W.Suh
compound source
Molecule: Phosphopantetheine Adenylyltransferase
Chain: A, B, C, D, E, F
Synonym: Ppat, Pantetheine-Phosphate Adenylyltransferase, D Coa Pyrophosphorylase;
Ec: 2.7.7.3
Engineered: Yes
Organism_scientific: Enterococcus Faecalis
Organism_common: Streptococcus Faecalis
Organism_taxid: 1351
Gene: Coad
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet-21a(+)
symmetry Space Group: P 21 21 21
R_factor 0.206 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
112.793 123.906 124.233 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand ATP enzyme Transferase E.C.2.7.7.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, E, B


Primary referenceCrystal structure of phosphopantetheine adenylyltransferase from Enterococcus faecalis in the ligand-unbound state and in complex with ATP and pantetheine., Yoon HJ, Kang JY, Mikami B, Lee HH, Suh SW, Mol Cells. 2011 Nov;32(5):431-5. Epub 2011 Sep 9. PMID:21912874
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (164 Kb) [Save to disk]
  • Biological Unit Coordinates (3nd6.pdb1.gz) 158 Kb
  • LPC: Ligand-Protein Contacts for 3ND6
  • CSU: Contacts of Structural Units for 3ND6
  • Structure Factors (573 Kb)
  • Retrieve 3ND6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ND6 from S2C, [Save to disk]
  • Re-refined 3nd6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ND6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ND6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ND6, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nd6] [3nd6_B] [3nd6_C] [3nd6_D] [3nd6_A] [3nd6_F] [3nd6_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3ND6
  • Community annotation for 3ND6 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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