3ND9	Hydrolase	date	Jun 07, 2010
title	Structural Characterization For The Nucleotide Binding Abili Subunit A Of The A1ao Atp Synthase
authors	A.Kumar, J.Jeyakanthan, G.Gruber
compound		source
Molecule: V-Type Atp Synthase Alpha Chain Chain: A Fragment: Catalytic (Unp Residues 1-240, 617-964) Synonym: A-Type Atp Synthase Catalytic Subunit A, V-Atpase Ec: 3.6.3.14 Engineered: Yes Mutation: Yes Other_details: The Fusion Of Residues 1-240 And Residues 61 V-Atpase Subunit A		Organism_scientific: Pyrococcus Horikoshii Organism_taxid: 53953 Strain: Ot3 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 De3 Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet22b(+)-His6
symmetry	Space Group: P 43 21 2	R_factor 0.220 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 128.381 128.381 105.057 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.10 Å
ligand	MRD	enzyme	Hydrolase E.C.3.6.3.14 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	The Transition-Like State and P(i) Entrance into the Catalytic A Subunit of the Biological Engine A-ATP Synthase., Manimekalai MS, Kumar A, Jeyakanthan J, Gruber G, J Mol Biol. 2011 Mar 16. PMID:21396943

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (171 Kb) [Save to disk] Biological Unit Coordinates (3nd9.pdb1.gz) 165 Kb LPC: Ligand-Protein Contacts for 3ND9 CSU: Contacts of Structural Units for 3ND9 Structure Factors (250 Kb) Retrieve 3ND9 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3ND9 from S2C, [Save to disk] Re-refined 3nd9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Visual 3D analysis of 3ND9

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3ND9, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3nd9_A] [3nd9] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 3ND9

Community annotation for 3ND9 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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