3NDM Transferase Transferase Inhibitor date Jun 07, 2010
title Crystal Structure Of Rho-Associated Protein Kinase (Rock1) W Potent Isoquinolone Derivative
authors X.Li
compound source
Molecule: Rho-Associated Protein Kinase (Rock1)
Chain: A, B, C, D
Fragment: N-Terminal And Kinase Domain, Residues 6-415
Synonym: Rock1
Ec: 2.7.1.37
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: C 1 2 1
R_factor 0.241 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.784 83.553 177.962 90.00 119.95 90.00
method X-Ray Diffractionresolution 3.30 Å
ligand 3ND enzyme Transferase E.C.2.7.1.37 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceSubstituted 2H-isoquinolin-1-ones as potent Rho-kinase inhibitors: part 3, aryl substituted pyrrolidines., Bosanac T, Hickey ER, Ginn J, Kashem M, Kerr S, Kugler S, Li X, Olague A, Schlyer S, Young ER, Bioorg Med Chem Lett. 2010 Jun 15;20(12):3746-9. Epub 2010 Apr 21. PMID:20471253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (259 Kb) [Save to disk]
  • Biological Unit Coordinates (3ndm.pdb1.gz) 130 Kb
  • Biological Unit Coordinates (3ndm.pdb2.gz) 128 Kb
  • LPC: Ligand-Protein Contacts for 3NDM
  • CSU: Contacts of Structural Units for 3NDM
  • Structure Factors (245 Kb)
  • Retrieve 3NDM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NDM from S2C, [Save to disk]
  • Re-refined 3ndm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NDM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NDM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NDM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ndm_B] [3ndm] [3ndm_D] [3ndm_A] [3ndm_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NDM: [S_TK_X] [S_TKc ] by SMART
  • Other resources with information on 3NDM
  • Community annotation for 3NDM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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