3NJP Transferase date Jun 17, 2010
title The Extracellular And Transmembrane Domain Interfaces In Epi Growth Factor Receptor Signaling
authors C.Lu, L.Z.Mi, M.J.Grey, J.Zhu, E.Graef, S.Yokoyama, T.A.Springer
compound source
Molecule: Epidermal Growth Factor Receptor
Chain: A, B
Synonym: Receptor Tyrosine-Protein Kinase Erbb-1, Proto-Onc Erbb-1;
Ec: 2.7.10.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egfr, Erbb1
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_strain: Lec8
Expression_system_organ: Ovary
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pcdna3.1zeo(+)

Molecule: Epidermal Growth Factor
Chain: C, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egf
Expression_system: Cricetulus Griseus
Expression_system_common: Chinese Hamster
Expression_system_taxid: 10029
Expression_system_organ: Ovary
symmetry Space Group: P 31 2 1
R_factor 0.263 R_Free 0.298
crystal
cell
length a length b length c angle alpha angle beta angle gamma
220.167 220.167 113.123 90.00 90.00 120.00
method X-Ray Diffractionresolution 3.30 Å
ligand 2PE, NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructural Evidence for Loose Linkage between Ligand Binding and Kinase Activation in the Epidermal Growth Factor Receptor., Lu C, Mi LZ, Grey MJ, Zhu J, Graef E, Yokoyama S, Springer TA, Mol Cell Biol. 2010 Sep 13. PMID:20837704
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (451 Kb) [Save to disk]
  • Biological Unit Coordinates (3njp.pdb1.gz) 441 Kb
  • Biological Unit Coordinates (3njp.pdb2.gz) 223 Kb
  • Biological Unit Coordinates (3njp.pdb3.gz) 224 Kb
  • LPC: Ligand-Protein Contacts for 3NJP
  • CSU: Contacts of Structural Units for 3NJP
  • Structure Factors (391 Kb)
  • Retrieve 3NJP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NJP from S2C, [Save to disk]
  • Re-refined 3njp structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NJP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NJP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NJP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3njp] [3njp_B] [3njp_A] [3njp_D] [3njp_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3NJP: [EGF] [FU ] by SMART
  • Other resources with information on 3NJP
  • Community annotation for 3NJP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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