3NNV Transferase date Jun 24, 2010
title Crystal Structure Of P38 Alpha In Complex With Dp437
authors J.Abendroth
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Mitogen-Activated Protein Alpha, Map Kinase P38 Alpha, Cytokine Suppressive Anti-Infl Drug-Binding Protein, Csaid-Binding Protein, Csbp, Max-Inte Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapk14, Csbp, Csbp1, Csbp2, Cspb1, Mxi2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_vector: Plasmid
Expression_system_plasmid: Vcid 1792
symmetry Space Group: P 21 21 21
R_factor 0.186 R_Free 0.235
crystal
cell
length a length b length c angle alpha angle beta angle gamma
45.561 86.334 125.774 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.10 Å
ligand 437 BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSwitch control pocket inhibitors of p38-MAP kinase. Durable type II inhibitors that do not require binding into the canonical ATP hinge region., Ahn YM, Clare M, Ensinger CL, Hood MM, Lord JW, Lu WP, Miller DF, Patt WC, Smith BD, Vogeti L, Kaufman MD, Petillo PA, Wise SC, Abendroth J, Chun L, Clark R, Feese M, Kim H, Stewart L, Flynn DL, Bioorg Med Chem Lett. 2010 Oct 1;20(19):5793-8. Epub 2010 Aug 3. PMID:20800479
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (3nnv.pdb1.gz) 62 Kb
  • LPC: Ligand-Protein Contacts for 3NNV
  • CSU: Contacts of Structural Units for 3NNV
  • Structure Factors (426 Kb)
  • Retrieve 3NNV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NNV from S2C, [Save to disk]
  • Re-refined 3nnv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NNV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NNV
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NNV, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nnv] [3nnv_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NNV: [S_TKc ] by SMART
  • Other resources with information on 3NNV
  • Community annotation for 3NNV at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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