3NQ9 Transport Protein date Jun 29, 2010
title Bovine Beta-Lactoglobulin Complex With Caprylic Acid
authors J.I.Loch, K.Lewinski
compound source
Molecule: Beta-Lactoglobulin
Chain: A
Synonym: Beta-Lg
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Tissue: Milk
symmetry Space Group: P 32 2 1
R_factor 0.233 R_Free 0.309
crystal
cell
length a length b length c angle alpha angle beta angle gamma
53.470 53.470 112.060 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CL, OCA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceTwo modes of fatty acid binding to bovine beta-lactoglobulin-crystallographic and spectroscopic studies., Loch J, Polit A, Gorecki A, Bonarek P, Kurpiewska K, Dziedzicka-Wasylewska M, Lewinski K, J Mol Recognit. 2011 Mar;24(2):341-9. doi: 10.1002/jmr.1084. Epub 2010 Dec, 14. PMID:21360616
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (3nq9.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 3NQ9
  • CSU: Contacts of Structural Units for 3NQ9
  • Structure Factors (217 Kb)
  • Retrieve 3NQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NQ9 from S2C, [Save to disk]
  • Re-refined 3nq9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NQ9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NQ9, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nq9_A] [3nq9]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NQ9
  • Community annotation for 3NQ9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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