3NSS Hydrolase date Jul 02, 2010
title The 2009 Pandemic H1n1 Neuraminidase N1 Lacks The 150-Cavity Active Sites
authors Q.Li, J.X.Qi, W.Zhang, C.J.Vavricka, Y.Shi, G.F.Gao
compound source
Molecule: Neuraminidase
Chain: A, B
Fragment: Unp Residues 82-469
Engineered: Yes
Organism_scientific: Influenza A Virus
Organism_taxid: 641501
Strain: Acalifornia042009 H1n1
Gene: Na
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
Expression_system_cell_line: Sf9
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pacgp67-B
symmetry Space Group: C 2 2 21
R_factor 0.169 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
118.537 137.857 118.512 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ACT, CA, MAN, NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe 2009 pandemic H1N1 neuraminidase N1 lacks the 150-cavity in its active site., Li Q, Qi J, Zhang W, Vavricka CJ, Shi Y, Wei J, Feng E, Shen J, Chen J, Liu D, He J, Yan J, Liu H, Jiang H, Teng M, Li X, Gao GF, Nat Struct Mol Biol. 2010 Oct;17(10):1266-8. Epub 2010 Sep 19. PMID:20852645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (3nss.pdb1.gz) 528 Kb
  • LPC: Ligand-Protein Contacts for 3NSS
  • CSU: Contacts of Structural Units for 3NSS
  • Structure Factors (968 Kb)
  • Retrieve 3NSS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NSS from S2C, [Save to disk]
  • Re-refined 3nss structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NSS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NSS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NSS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nss] [3nss_B] [3nss_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NSS
  • Community annotation for 3NSS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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