3NTE Viral Protein date Jul 03, 2010
title Crystal Structure Of The Wild-Type Full-Length Hiv-1 Capsid
authors L.Betts, J.I.Yeh
compound source
Molecule: Hiv-1 Capsid Protein
Chain: A, B
Fragment: Unp Residues 133-353
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Strain: Hiv-1
Gene: Ca, Gag
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.204 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.910 86.532 55.589 90.00 99.73 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand FE, I3M, IOD, NA enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructure of the HIV-1 full-length capsid protein in a conformationally trapped unassembled state induced by small-molecule binding., Du S, Betts L, Yang R, Shi H, Concel J, Ahn J, Aiken C, Zhang P, Yeh JI, J Mol Biol. 2011 Feb 25;406(3):371-86. doi: 10.1016/j.jmb.2010.11.027. Epub 2010 , Dec 10. PMID:21146540
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk]
  • Biological Unit Coordinates (3nte.pdb1.gz) 144 Kb
  • Biological Unit Coordinates (3nte.pdb2.gz) 144 Kb
  • LPC: Ligand-Protein Contacts for 3NTE
  • CSU: Contacts of Structural Units for 3NTE
  • Structure Factors (627 Kb)
  • Retrieve 3NTE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NTE from S2C, [Save to disk]
  • Re-refined 3nte structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3NTE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3NTE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NTE, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nte_B] [3nte] [3nte_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3NTE
  • Community annotation for 3NTE at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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