3NUM Hydrolase date Jul 07, 2010
title Substrate Induced Remodeling Of The Active Site Regulates Ht Activity
authors L.Truebestein, A.Tennstaedt, P.Hauske, T.Krojer, M.Kaiser, T.Clau M.Ehrmann
compound source
Molecule: Serine Protease Htra1
Chain: A
Fragment: Protease And Pdz Domain (Unp Residue 158-480)
Synonym: L56, Serine Protease 11
Ec: 3.4.21.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Htra1, Htra, Prss11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21d
symmetry Space Group: H 3
R_factor 0.242 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
109.476 109.476 113.956 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.75 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSubstrate-induced remodeling of the active site regulates human HTRA1 activity., Truebestein L, Tennstaedt A, Monig T, Krojer T, Canellas F, Kaiser M, Clausen T, Ehrmann M, Nat Struct Mol Biol. 2011 Feb 6. PMID:21297635
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (66 Kb) [Save to disk]
  • Biological Unit Coordinates (3num.pdb1.gz) 176 Kb
  • CSU: Contacts of Structural Units for 3NUM
  • Structure Factors (97 Kb)
  • Retrieve 3NUM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NUM from S2C, [Save to disk]
  • Re-refined 3num structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NUM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NUM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NUM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3num] [3num_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NUM: [PDZ ] by SMART
  • Other resources with information on 3NUM
  • Community annotation for 3NUM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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