3NUP Transferase Transferase Inhibitor date Jul 07, 2010
title Cdk6 (Monomeric) In Complex With Inhibitor
authors R.Chopra
compound source
Molecule: Cell Division Protein Kinase 6
Chain: A
Fragment: Unp Residues 1-301
Synonym: Serinethreonine-Protein Kinase Plstire
Ec: 2.7.11.22
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cdk6
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
symmetry Space Group: I 4
R_factor 0.238 R_Free 0.264
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.778 101.778 59.296 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.60 Å
ligand 3NU enzyme Transferase E.C.2.7.11.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference4-(Pyrazol-4-yl)-pyrimidines as selective inhibitors of cyclin-dependent kinase 4/6., Cho YS, Borland M, Brain C, Chen CH, Cheng H, Chopra R, Chung K, Groarke J, He G, Hou Y, Kim S, Kovats S, Lu Y, O'Reilly M, Shen J, Smith T, Trakshel G, Vogtle M, Xu M, Xu M, Sung MJ, J Med Chem. 2010 Nov 25;53(22):7938-57. Epub 2010 Nov 1. PMID:21038853
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (3nup.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 3NUP
  • CSU: Contacts of Structural Units for 3NUP
  • Structure Factors (377 Kb)
  • Retrieve 3NUP in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NUP from S2C, [Save to disk]
  • Re-refined 3nup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NUP in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NUP
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NUP, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nup_A] [3nup]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NUP: [S_TKc ] by SMART
  • Other resources with information on 3NUP
  • Community annotation for 3NUP at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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