3NWW Transferase Transferase Inhibitor date Jul 12, 2010
title P38 Alpha Kinase Complexed With A 2-Aminothiazol-5-Yl-Pyrimi Inhibitor
authors J.S.Sack
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Mitogen-Activated Protein Alpha, Map Kinase P38 Alpha, Cytokine Suppressive Anti-Infl Drug-Binding Protein, Csaid-Binding Protein, Csbp, Max-Inte Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_cell_line: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.254
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.155 75.055 78.628 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.09 Å
ligand 3NW BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceUtilization of a nitrogen-sulfur nonbonding interaction in the design of new 2-aminothiazol-5-yl-pyrimidines as p38alpha MAP kinase inhibitors., Lin S, Wrobleski ST, Hynes J Jr, Pitt S, Zhang R, Fan Y, Doweyko AM, Kish KF, Sack JS, Malley MF, Kiefer SE, Newitt JA, McKinnon M, Trzaskos J, Barrish JC, Dodd JH, Schieven GL, Leftheris K, Bioorg Med Chem Lett. 2010 Jul 30. PMID:20732813
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (3nww.pdb1.gz) 60 Kb
  • LPC: Ligand-Protein Contacts for 3NWW
  • CSU: Contacts of Structural Units for 3NWW
  • Structure Factors (294 Kb)
  • Retrieve 3NWW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NWW from S2C, [Save to disk]
  • Re-refined 3nww structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NWW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NWW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NWW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nww] [3nww_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3NWW: [S_TKc ] by SMART
  • Other resources with information on 3NWW
  • Community annotation for 3NWW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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