3NXU Oxidoreductase Oxidoreductase Inhibitor date Jul 14, 2010
title Crystal Structure Of Human Cytochrome P4503a4 Bound To An In Ritonavir
authors I.F.Sevrioukova, T.L.Poulos
compound source
Molecule: Cytochrome P450 3a4
Chain: A, B
Fragment: Unp Residues 1-2 And 25-503
Synonym: Quinine 3-Monooxygenase, Cypiiia4, Nifedipine Oxid Cytochrome P450 3a3, Cypiiia3, Cytochrome P450 Hlp, Taurochenodeoxycholate 6-Alpha-Hydroxylase, Cytochrome P450 Cytochrome P450-Pcn1, Albendazole Monooxygenase, Albendazol Sulfoxidase;
Ec: 1.14.13.67, 1.14.13.97, 1.14.13.32
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp3a3, Cyp3a4
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.262
crystal
cell
length a length b length c angle alpha angle beta angle gamma
162.123 94.690 93.130 90.00 124.25 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand DMS, HEM, RIT BindingDB enzyme Oxidoreductase E.C.1.14.13.67 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • vitamin D3 25-hydroxylase ac...


  • Primary referenceStructure and mechanism of the complex between cytochrome P4503A4 and ritonavir., Sevrioukova IF, Poulos TL, Proc Natl Acad Sci U S A. 2010 Oct 11. PMID:20937904
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (165 Kb) [Save to disk]
  • Biological Unit Coordinates (3nxu.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (3nxu.pdb2.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 3NXU
  • CSU: Contacts of Structural Units for 3NXU
  • Structure Factors (3828 Kb)
  • Retrieve 3NXU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3NXU from S2C, [Save to disk]
  • Re-refined 3nxu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3NXU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3NXU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3NXU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3nxu_B] [3nxu_A] [3nxu]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3NXU
  • Community annotation for 3NXU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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