3O2L Hydrolase date Jul 22, 2010
title Crystal Structure Of An Inactive Kemp Elimination Design Hg-
authors L.M.Thomas, H.K.Privett, S.L.Mayo
compound source
Molecule: Endo-1,4-Beta-Xylanase
Chain: A
Fragment: Unp Residues 27-329
Synonym: Xylanase, 1,4-Beta-D-Xylan Xylanohydrolase, Taxi
Ec: 3.2.1.8
Engineered: Yes
Mutation: Yes
Organism_scientific: Thermoascus Aurantiacus
Organism_taxid: 5087
Gene: Xyna
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.167 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
48.288 72.452 74.636 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand
enzyme Hydrolase E.C.3.2.1.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceIterative approach to computational enzyme design., Privett HK, Kiss G, Lee TM, Blomberg R, Chica RA, Thomas LM, Hilvert D, Houk KN, Mayo SL, Proc Natl Acad Sci U S A. 2012 Mar 6;109(10):3790-5. Epub 2012 Feb 22. PMID:22357762
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (3o2l.pdb1.gz) 49 Kb
  • CSU: Contacts of Structural Units for 3O2L
  • Structure Factors (308 Kb)
  • Retrieve 3O2L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O2L from S2C, [Save to disk]
  • Re-refined 3o2l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O2L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O2L
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O2L, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o2l] [3o2l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O2L: [Glyco_10 ] by SMART
  • Other resources with information on 3O2L
  • Community annotation for 3O2L at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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