3O3Q Heparin-Binding Protein date Jul 25, 2010
title Crystal Structure Of "L44fm67il73va103gdeletion 104- 106f108yv109ll111ic117vr119gdeletion 120-122" Mutant Human Acidic Fibroblast Growth Factor
authors J.Lee, M.Blaber
compound source
Molecule: Heparin-Binding Growth Factor 1
Chain: A, B, C, D
Synonym: Hbgf-1, Acidic Fibroblast Growth Factor, Afgf, Bet Endothelial Cell Growth Factor, Ecgf-Beta;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fgf1, Fgfa
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet21a(+)
symmetry Space Group: P 1
R_factor 0.170 R_Free 0.203
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.920 56.890 61.920 64.94 89.76 71.27
method X-Ray Diffractionresolution 1.60 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceA polypeptide "building block" for the beta-trefoil fold identified by "top-down symmetric deconstruction"., Lee J, Blaber SI, Dubey VK, Blaber M, J Mol Biol. 2011 Apr 15;407(5):744-63. Epub 2011 Feb 16. PMID:21315087
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (95 Kb) [Save to disk]
  • Biological Unit Coordinates (3o3q.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (3o3q.pdb2.gz) 24 Kb
  • Biological Unit Coordinates (3o3q.pdb3.gz) 25 Kb
  • Biological Unit Coordinates (3o3q.pdb4.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 3O3Q
  • CSU: Contacts of Structural Units for 3O3Q
  • Structure Factors (882 Kb)
  • Retrieve 3O3Q in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O3Q from S2C, [Save to disk]
  • Re-refined 3o3q structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O3Q in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O3Q
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O3Q, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o3q] [3o3q_B] [3o3q_A] [3o3q_D] [3o3q_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O3Q: [FGF ] by SMART
  • Other resources with information on 3O3Q
  • Community annotation for 3O3Q at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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