3O4L	Immune System	date	Jul 27, 2010
title	Genetic And Structural Basis For Selection Of A Ubiquitous T Receptor Deployed In Epstein-Barr Virus
authors	J.J.Miles, A.M.Bulek, D.K.Cole, E.Gostick, J.A.Schauenburg, G.Dol V.Venturi, M.P.Davenport, M.P.Tan, S.R.Burrows, L.Wooldridge, D. P.J.Rizkallah, A.K.Sewell
compound		source
Molecule: Mhc Class I Antigen Chain: A		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Beta-2-Microglobulin Chain: B Synonym: Beta-2-Microglobulin Form Pi 5.3 Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: Bslf2bmlf1 Protein Chain: C Fragment: Residues 286-294		Organism_scientific: Human Herpesvirus 4 Organism_common: Epstein-Barr Virus Ebv Organism_taxid: 10376
Molecule: T-Cell Receptor, Alpha Chain Chain: D		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
Molecule: T-Cell Receptor, Beta Chain Chain: E		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606
symmetry	Space Group: P 21 21 2	R_factor 0.221 R_Free 0.296
crystal cell	length a length b length c angle alpha angle beta angle gamma 94.080 122.500 82.370 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.54 Å
ligand	GOL, MES, SO4	enzyme
Gene Ontology	Chain Function Process Component B cellular response to iron io...
Primary reference	Genetic and structural basis for selection of a ubiquitous T cell receptor deployed in Epstein-Barr virus infection., Miles JJ, Bulek AM, Cole DK, Gostick E, Schauenburg AJ, Dolton G, Venturi V, Davenport MP, Tan MP, Burrows SR, Wooldridge L, Price DA, Rizkallah PJ, Sewell AK, PLoS Pathog. 2010 Nov 18;6(11):e1001198. PMID:21124993

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (289 Kb) [Save to disk] Biological Unit Coordinates (3o4l.pdb1.gz) 282 Kb LPC: Ligand-Protein Contacts for 3O4L CSU: Contacts of Structural Units for 3O4L Structure Factors (1688 Kb) Retrieve 3O4L in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3O4L from S2C, [Save to disk] Re-refined 3o4l structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3O4L in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3O4L

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3O4L, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3o4l_D] [3o4l_B] [3o4l_C] [3o4l_E] [3o4l_A] [3o4l] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3O4L: [IG] [IG_like] [IGc1 ] by SMART

Other resources with information on 3O4L

Community annotation for 3O4L at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---