3O4P Hydrolase date Jul 27, 2010
title Dfpase At 0.85 Angstrom Resolution (H Atoms Included)
authors D.Liebschner, M.Elias, J.Koepke, C.Lecomte, B.Guillot, C.Jelsch, E.Chabriere
compound source
Molecule: Diisopropyl-Fluorophosphatase
Chain: A
Synonym: Dfpase
Ec: 3.1.8.2
Engineered: Yes
Organism_scientific: Loligo Vulgaris
Organism_common: Common European Squid
Organism_taxid: 6622
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.103 R_Free 0.121
crystal
cell
length a length b length c angle alpha angle beta angle gamma
43.114 81.849 86.467 90.00 90.00 90.00
method X-Ray Diffractionresolution 0.85 Å
ligand CA, DXE, EDO, GOL, ME2, MES, MXE, PEG, PGE enzyme Hydrolase E.C.3.1.8.2 BRENDA
note 3O4P is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHydrogen atoms in protein structures: high-resolution X-ray diffraction structure of the DFPase., Elias M, Liebschner D, Koepke J, Lecomte C, Guillot B, Jelsch C, Chabriere E, BMC Res Notes. 2013 Aug 2;6:308. doi: 10.1186/1756-0500-6-308. PMID:23915572
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk]
  • Biological Unit Coordinates (3o4p.pdb1.gz) 168 Kb
  • LPC: Ligand-Protein Contacts for 3O4P
  • CSU: Contacts of Structural Units for 3O4P
  • Structure Factors (2226 Kb)
  • Retrieve 3O4P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O4P from S2C, [Save to disk]
  • Re-refined 3o4p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O4P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O4P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O4P, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o4p_A] [3o4p]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3O4P
  • Community annotation for 3O4P at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science