3O8T Transferase date Aug 03, 2010
title Conformational Plasticity Of P38 Map Kinase Dfg-Motif Mutant Response To Inhibitor Binding
authors H.V.Namboodiri, M.Karpusas, M.Bukhtiyarova, E.B.Springman
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Fragment: Kinase Domain
Synonym: Map Kinase 14, Mapk 14, Mitogen-Activated Protein Alpha, Map Kinase P38 Alpha, Cytokine Suppressive Anti-Infl Drug-Binding Protein, Csaid-Binding Protein, Csbp, Max-Inte Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2
symmetry Space Group: P 21 21 21
R_factor 0.225 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.489 70.724 75.682 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BMU, BOG BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (62 Kb) [Save to disk]
  • Biological Unit Coordinates (3o8t.pdb1.gz) 57 Kb
  • LPC: Ligand-Protein Contacts for 3O8T
  • CSU: Contacts of Structural Units for 3O8T
  • Structure Factors (223 Kb)
  • Retrieve 3O8T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O8T from S2C, [Save to disk]
  • Re-refined 3o8t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3O8T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3O8T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O8T, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o8t_A] [3o8t]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3O8T: [S_TKc ] by SMART
  • Other resources with information on 3O8T
  • Community annotation for 3O8T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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