3O9Z Oxidoreductase date Aug 04, 2010
title Crystal Structure Of The Wlba (Wbpb) Dehydrogenase From Ther Thermophilus In Complex With Nad And Alpha-Ketoglutarate At Angstrom Resolution
authors H.M.Holden, J.B.Thoden
compound source
Molecule: Lipopolysaccharide Biosynthesis Protein Wbpb
Chain: A, B, C, D
Engineered: Yes
 Organism_scientific: Thermus Thermophilus
Organism_taxid: 262724
Strain: Hb27 Atcc Baa-163 Dsm 7039
Gene: Tt_c0287, Wbpb
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta2(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 1 21 1
R_factor 0.194 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.781 68.199 164.053 90.00 94.66 90.00
method X-Ray Diffractionresolution 1.45 Å
ligand AKG, CL, EDO, NAD enzyme
Gene TT
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • oxidoreductase activity


    • Primary referenceStructural and Functional Studies of WlbA: A Dehydrogenase Involved in the Biosynthesis of 2,3-Diacetamido-2,3-dideoxy-d-mannuronic Acid ., Thoden JB, Holden HM, Biochemistry. 2010 Aug 19. PMID:20690587
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (230 Kb) [Save to disk]
  • Biological Unit Coordinates (3o9z.pdb1.gz) 222 Kb
  • LPC: Ligand-Protein Contacts for 3O9Z
  • CSU: Contacts of Structural Units for 3O9Z
  • Structure Factors (6527 Kb)
  • Retrieve 3O9Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3O9Z from S2C, [Save to disk]
  • Re-refined 3o9z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
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  • Proteopedia, because life has more than 2D.
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    • Visual 3D analysis of 3O9Z
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3O9Z, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3o9z_D] [3o9z_B] [3o9z_C] [3o9z_A] [3o9z]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
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  • Community annotation for 3O9Z at PDBWiki (http://pdbwiki.org)
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