3OAA Hydrolase Transport Protein date Aug 05, 2010
title Structure Of The E.Coli F1-Atp Synthase Inhibited By Subunit
authors G.Cingolani, T.M.Duncan
compound source
Molecule: Atp Synthase Subunit Alpha
Chain: A, B, C, I, J, K, Q, R, S, Y, Z, a
Ec: 3.6.3.14
Engineered: Yes
Organism_scientific: Escherichia Coli Dh1
Organism_taxid: 536056
Strain: Atcc 33849 Dsm 4235 Ncib 12045 K12 Dh1
Gene: Atpa, Ecdh1_4233
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Subunit Beta
Chain: D, E, F, L, M, N, T, U, V, b, c, d
Ec: 3.6.3.14
Engineered: Yes
Mutation: Yes

Organism_scientific: Escherichia Coli Dh1
Organism_taxid: 536056
Strain: Atcc 33849 Dsm 4235 Ncib 12045 K12 Dh1
Gene: Atpd, Ecdh1_4235
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Gamma Chain
Chain: G, O, W, e
Engineered: Yes

Organism_scientific: Escherichia Coli Dh1
Organism_taxid: 536056
Strain: Atcc 33849 Dsm 4235 Ncib 12045 K12 Dh1
Gene: Ecdh1_4234
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp Synthase Epsilon Chain
Chain: H, P, X, f
Engineered: Yes

Organism_scientific: Escherichia Coli Dh1
Organism_taxid: 536056
Strain: Atcc 33849 Dsm 4235 Ncib 12045 K12 Dh1
Gene: Atpc, Ecdh1_4236
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.243 R_Free 0.265
crystal
cell
length a length b length c angle alpha angle beta angle gamma
435.970 183.000 225.390 90.00 108.99 90.00
method X-Ray Diffractionresolution 3.26 Å
ligand ADP, ANP, MG, SO4 enzyme Hydrolase E.C.3.6.3.14 BRENDA
Gene ECDH1 ; ECDH1 ; ECDH1 ; ECDH1
Gene
Ontology
ChainFunctionProcessComponent
H, f, X, P


S, a, K, Y, Z, J, B, I, Q, C, A, R


T, N, d, E, c, b, D, U, F, V, M, L


e, W, G, O


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (4250 Kb) [Save to disk]
  • Biological Unit Coordinates (3oaa.pdb1.gz) 1066 Kb
  • Biological Unit Coordinates (3oaa.pdb2.gz) 1069 Kb
  • Biological Unit Coordinates (3oaa.pdb3.gz) 1078 Kb
  • Biological Unit Coordinates (3oaa.pdb4.gz) 1080 Kb
  • LPC: Ligand-Protein Contacts for 3OAA
  • CSU: Contacts of Structural Units for 3OAA
  • Structure Factors (2229 Kb)
  • Retrieve 3OAA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OAA from S2C, [Save to disk]
  • Re-refined 3oaa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OAA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OAA
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OAA, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oaa_O] [3oaa_U] [3oaa_S] [3oaa_d] [3oaa_Q] [3oaa_c] [3oaa_E] [3oaa_X] [3oaa_F] [3oaa_B] [3oaa_f] [3oaa_b] [3oaa_K] [3oaa_A] [3oaa_W] [3oaa_C] [3oaa_L] [3oaa_D] [3oaa_T] [3oaa_a] [3oaa_G] [3oaa_H] [3oaa_N] [3oaa_R] [3oaa_J] [3oaa_e] [3oaa_Y] [3oaa_I] [3oaa] [3oaa_V] [3oaa_Z] [3oaa_M] [3oaa_P]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OAA: [AAA ] by SMART
  • Other resources with information on 3OAA
  • Community annotation for 3OAA at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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