3OCG Transferase Transferase Inhibitor date Aug 10, 2010
title P38 Alpha Kinase Complexed With A 5-Amino-Pyrazole Based Inh
authors J.S.Sack
compound source
Molecule: Mitogen-Activated Protein Kinase 14
Chain: A
Synonym: Map Kinase 14, Mapk 14, Mitogen-Activated Protein Alpha, Map Kinase P38 Alpha, Cytokine Suppressive Anti-Infl Drug-Binding Protein, Csaid-Binding Protein, Csbp, Max-Inte Protein 2, Map Kinase Mxi2, Sapk2a;
Ec: 2.7.11.24
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Csbp, Csbp1, Csbp2, Cspb1, Mapk14, Mxi2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_cell_line: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 21 21 21
R_factor 0.212 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
67.940 71.430 80.550 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.21 Å
ligand OCG BindingDB enzyme Transferase E.C.2.7.11.24 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary reference5-Amino-pyrazoles as potent and selective p38alpha inhibitors., Das J, Moquin RV, Dyckman AJ, Li T, Pitt S, Zhang R, Shen DR, McIntyre KW, Gillooly K, Doweyko AM, Newitt JA, Sack JS, Zhang H, Kiefer SE, Kish K, McKinnon M, Barrish JC, Dodd JH, Schieven GL, Leftheris K, Bioorg Med Chem Lett. 2010 Dec 1;20(23):6886-9. Epub 2010 Oct 13. PMID:21035336
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (63 Kb) [Save to disk]
  • Biological Unit Coordinates (3ocg.pdb1.gz) 58 Kb
  • LPC: Ligand-Protein Contacts for 3OCG
  • CSU: Contacts of Structural Units for 3OCG
  • Structure Factors (223 Kb)
  • Retrieve 3OCG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OCG from S2C, [Save to disk]
  • Re-refined 3ocg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OCG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OCG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OCG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ocg] [3ocg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OCG: [S_TKc ] by SMART
  • Other resources with information on 3OCG
  • Community annotation for 3OCG at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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