3ODF Hydrolase date Aug 11, 2010
title Comparison Of The Character And The Speed Of X-Ray-Induced S Changes Of Porcine Pancreatic Elastase At Two Temperatures, 15k. The Data Set Was Collected From Region A Of The Crysta Step Of Radiation Damage
authors T.Petrova, S.Ginell, A.Mitschler, A.Cousido-Siah, I.Hazemann, A.P A.Joachimiak
compound source
Molecule: Chymotrypsin-Like Elastase Family Member 1
Chain: A
Synonym: Elastase-1
Ec: 3.4.21.36
 Organism_scientific: Sus Scrofa
Organism_common: Pigs,Swine,Wild Boar
Organism_taxid: 9823
symmetry Space Group: P 21 21 21
R_factor 0.122 R_Free 0.147
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.034 57.742 74.449 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.10 Å
ligand NA, SO4 enzyme Hydrolase E.C.3.4.21.36 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceX-ray-induced deterioration of disulfide bridges at atomic resolution., Petrova T, Ginell S, Mitschler A, Kim Y, Lunin VY, Joachimiak G, Cousido-Siah A, Hazemann I, Podjarny A, Lazarski K, Joachimiak A, Acta Crystallogr D Biol Crystallogr. 2010 Oct;66(Pt 10):1075-91. Epub 2010, Sep 18. PMID:20944241
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (3odf.pdb1.gz) 101 Kb
  • LPC: Ligand-Protein Contacts for 3ODF
  • CSU: Contacts of Structural Units for 3ODF
  • Structure Factors (1121 Kb)
  • Retrieve 3ODF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ODF from S2C, [Save to disk]
  • Re-refined 3odf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ODF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ODF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ODF, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3odf_A] [3odf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ODF: [Tryp_SPc ] by SMART
    • Other resources with information on 3ODF
  • Community annotation for 3ODF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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