3ODR Protein Binding date Aug 11, 2010
title Crystal Structure Of The N-Terminal Domain Of Human Sympleki
authors L.Tong, K.Xiang
compound source
Molecule: Symplekin
Chain: A
Fragment: N-Terminal Domain
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sympk, Spk
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.186 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.768 43.910 64.284 78.67 78.60 73.26
method X-Ray Diffractionresolution 2.20 Å
ligand EDO enzyme
Primary referenceCrystal structure of the human symplekin-Ssu72-CTD phosphopeptide complex., Xiang K, Nagaike T, Xiang S, Kilic T, Beh MM, Manley JL, Tong L, Nature. 2010 Sep 22. PMID:20861839
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (106 Kb) [Save to disk]
  • Biological Unit Coordinates (3odr.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 3ODR
  • CSU: Contacts of Structural Units for 3ODR
  • Structure Factors (380 Kb)
  • Retrieve 3ODR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ODR from S2C, [Save to disk]
  • Re-refined 3odr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ODR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ODR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ODR, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3odr_A] [3odr]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3ODR
  • Community annotation for 3ODR at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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