5XB0 Isomerase date Mar 15, 2017
title 1.6 A Crystal Structure Of Peptidyl-Prolyl Cis-Trans Isomera From Pseudomonas Syringae Pv. Tomato Str. Dc3000 (Pspto Dc3
authors H.Zhang, Y.Gao, M.Li, W.Chang
compound source
Molecule: Peptidyl-Prolyl Cis-Trans Isomerase
Chain: A
Fragment: Unp Residues 91-224
Ec: 5.2.1.8
Engineered: Yes
Organism_scientific: [Pseudomonas Syringae] Pv. Tomato Str.
Organism_taxid: 223283
Strain: Dc3000
Gene: Pspto_0135
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 21 21 21
R_factor 0.168 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
33.222 44.099 82.312 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand TLA enzyme Isomerase E.C.5.2.1.8 BRENDA
note 5XB0 supersedes 3OE2
Gene PSPTO
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (28 Kb) [Save to disk]
  • Biological Unit Coordinates (5xb0.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 5XB0
  • CSU: Contacts of Structural Units for 5XB0
  • Structure Factors (380 Kb)
  • Retrieve 5XB0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XB0 from S2C, [Save to disk]
  • Re-refined 5xb0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5XB0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XB0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xb0] [5xb0_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XB0
  • Community annotation for 5XB0 at PDBWiki (http://pdbwiki.org)

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