3OG7	Transferase Transferase Inhibitor	date	Aug 16, 2010
title	B-Raf Kinase V600e Oncogenic Mutant In Complex With Plx4032
authors	Y.Zhang, K.Y.Zhang, C.Zhang
compound		source
Molecule: Akap9-Braf Fusion Protein Chain: A, B Fragment: Kinase Domain (Unp Residues 1175-1446) Synonym: Proto-Oncogene B-Raf, P94, V-Raf Murine Sarcoma Vi Oncogene Homolog B1; Ec: 2.7.11.1 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Braf, Braf1, Rafb1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.213 R_Free 0.258
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.770 104.424 110.128 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.45 Å
ligand	032 BindingDB	enzyme	Transferase E.C.2.7.11.1 BRENDA
note	3OG7 (Molecule of the Month:pdb195)
Gene Ontology	Chain Function Process Component A, B
Primary reference	Clinical efficacy of a RAF inhibitor needs broad target blockade in BRAF-mutant melanoma., Bollag G, Hirth P, Tsai J, Zhang J, Ibrahim PN, Cho H, Spevak W, Zhang C, Zhang Y, Habets G, Burton EA, Wong B, Tsang G, West BL, Powell B, Shellooe R, Marimuthu A, Nguyen H, Zhang KY, Artis DR, Schlessinger J, Su F, Higgins B, Iyer R, D'Andrea K, Koehler A, Stumm M, Lin PS, Lee RJ, Grippo J, Puzanov I, Kim KB, Ribas A, McArthur GA, Sosman JA, Chapman PB, Flaherty KT, Xu X, Nathanson KL, Nolop K, Nature. 2010 Sep 7. PMID:20823850

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (174 Kb) [Save to disk] Biological Unit Coordinates (3og7.pdb1.gz) 85 Kb Biological Unit Coordinates (3og7.pdb2.gz) 86 Kb LPC: Ligand-Protein Contacts for 3OG7 CSU: Contacts of Structural Units for 3OG7 Structure Factors (250 Kb) Retrieve 3OG7 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OG7 from S2C, [Save to disk] Re-refined 3og7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OG7 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OG7

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OG7, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3og7] [3og7_B] [3og7_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OG7: [STYKc ] by SMART

Other resources with information on 3OG7

Community annotation for 3OG7 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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