3OHN Membrane Protein date Aug 17, 2010
title Crystal Structure Of The Fimd Translocation Domain
authors T.Wang, H.Li
compound source
Molecule: Outer Membrane Usher Protein Fimd
Chain: A, B
Fragment: Translocation Domain (Unp Residues 169-708)
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Fimd
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: B Tuner
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnh297
symmetry Space Group: P 1
R_factor 0.230 R_Free 0.305
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.022 87.132 95.883 63.92 88.43 76.94
method X-Ray Diffractionresolution 3.01 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the FimD usher bound to its cognate FimC-FimH substrate., Phan G, Remaut H, Wang T, Allen WJ, Pirker KF, Lebedev A, Henderson NS, Geibel S, Volkan E, Yan J, Kunze MB, Pinkner JS, Ford B, Kay CW, Li H, Hultgren SJ, Thanassi DG, Waksman G, Nature. 2011 Jun 2;474(7349):49-53. PMID:21637253
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (151 Kb) [Save to disk]
  • Biological Unit Coordinates (3ohn.pdb1.gz) 145 Kb
  • Biological Unit Coordinates (3ohn.pdb2.gz) 145 Kb
  • Biological Unit Coordinates (3ohn.pdb3.gz) 144 Kb
  • CSU: Contacts of Structural Units for 3OHN
  • Structure Factors (318 Kb)
  • Retrieve 3OHN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OHN from S2C, [Save to disk]
  • Re-refined 3ohn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3OHN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3OHN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OHN, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ohn_A] [3ohn] [3ohn_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 3OHN
  • Community annotation for 3OHN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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