3OJ3	Protein Binding Hydrolase	date	Aug 20, 2010
title	Crystal Structure Of The A20 Znf4 And Ubiquitin Complex
authors	I.Bosanac, S.G.Hymowitz
compound		source
Molecule: Ubiquitin Chain: A, B, C, D, E, F, G, H Fragment: Ubiquitin, Unp Residues 1-76 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Codon + Ril Expression_system_vector_type: Pet (Invitrogen) Expression_system_plasmid: Pet-15b
Molecule: Tumor Necrosis Factor Alpha-Induced Protein 3 Chain: I, J, K, L, M, N, O, P Fragment: Zinc Finger A20-Type 4, Unp Residues 592-635 Synonym: Tnf Alpha-Induced Protein 3, Otu Domain-Containing 7c, Putative Dna-Binding Protein A20, Zinc Finger Protein A Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Tnfaip3, Otud7c Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Codon + Ril Expression_system_vector_type: Pet (Invitrogen) Expression_system_plasmid: Pet-15b
symmetry	Space Group: P 1 21 1	R_factor 0.203 R_Free 0.226
crystal cell	length a length b length c angle alpha angle beta angle gamma 42.830 170.030 66.239 90.00 90.10 90.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component O, J, N, P, K, M, I, L
Primary reference	Ubiquitin Binding to A20 ZnF4 Is Required for Modulation of NF-kappaB Signaling., Bosanac I, Wertz IE, Pan B, Yu C, Kusam S, Lam C, Phu L, Phung Q, Maurer B, Arnott D, Kirkpatrick DS, Dixit VM, Hymowitz SG, Mol Cell. 2010 Nov 24;40(4):548-57. PMID:21095585

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (141 Kb) [Save to disk] Biological Unit Coordinates (3oj3.pdb1.gz) 20 Kb Biological Unit Coordinates (3oj3.pdb2.gz) 19 Kb Biological Unit Coordinates (3oj3.pdb3.gz) 19 Kb Biological Unit Coordinates (3oj3.pdb4.gz) 19 Kb Biological Unit Coordinates (3oj3.pdb5.gz) 19 Kb Biological Unit Coordinates (3oj3.pdb6.gz) 19 Kb Biological Unit Coordinates (3oj3.pdb7.gz) 19 Kb Biological Unit Coordinates (3oj3.pdb8.gz) 19 Kb Biological Unit Coordinates (3oj3.pdb9.gz) 43 Kb LPC: Ligand-Protein Contacts for 3OJ3 CSU: Contacts of Structural Units for 3OJ3 Structure Factors (827 Kb) Retrieve 3OJ3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OJ3 from S2C, [Save to disk] Re-refined 3oj3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OJ3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OJ3

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OJ3, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oj3_H] [3oj3_D] [3oj3_G] [3oj3_E] [3oj3_M] [3oj3_K] [3oj3_B] [3oj3_J] [3oj3] [3oj3_A] [3oj3_I] [3oj3_L] [3oj3_F] [3oj3_N] [3oj3_P] [3oj3_C] [3oj3_O] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3OJ3: [UBQ] [ZnF_A20 ] by SMART

Other resources with information on 3OJ3

Community annotation for 3OJ3 at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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