3OL7 Transferase Rna date Aug 25, 2010
title Poliovirus Polymerase Elongation Complex With Ctp
authors P.Gong, O.B.Peersen
compound source
Molecule: Polymerase
Chain: A, E, I, M
Fragment: Unp Residues 1749-2209
Ec: 2.7.7.48
Engineered: Yes
Mutation: Yes
Organism_scientific: Human Poliovirus 1
Organism_taxid: 12080
Strain: Mahoney
Gene: 3d
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet26b

Molecule: Rna (5'- R(Apapgpupcpupcpcpapgpgpupcpupcpupcpgpup Gpapapa)-3');
Chain: B, F, J, N
Engineered: Yes
Other_details: Template Rna

Synthetic: Yes
Other_details: Rna Prepared By T7 Rna Polymerase Transcript Followed By Glms Ribozyme Self-Cleavage;

Molecule: Rna (5'-R(Gpcpcpcpgpgpapcpgpapgpapgp 3');
Chain: C, G, K, O
Engineered: Yes
Other_details: Product Rna

Synthetic: Yes
Other_details: 5' Portion Was Generated By Chemical Synthes 3'-Pentanucleotide Was Added To The Rna Chain By Poliovirus Dependent Rna Polymerase;

Molecule: Rna (5'-R(Gpgpgpapgpapupgpa)-3')
Chain: D, H, L, P
Engineered: Yes
Other_details: Nontemplate Rna

Synthetic: Yes
Other_details: Rna Prepared By T7 Rna Polymerase Transcript Followed By Glms Ribozyme Self-Cleavage
symmetry Space Group: P 1
R_factor 0.226 R_Free 0.290
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.724 60.769 192.969 83.01 82.93 77.12
method X-Ray Diffractionresolution 2.70 Å
ligand GOL, IPA, MG, PEG, POP, ZN enzyme Transferase E.C.2.7.7.48 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, M, I, E


Primary referenceStructural basis for active site closure by the poliovirus RNA-dependent RNA polymerase., Gong P, Peersen OB, Proc Natl Acad Sci U S A. 2010 Dec 10. PMID:21148772
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (758 Kb) [Save to disk]
  • Biological Unit Coordinates (3ol7.pdb1.gz) 190 Kb
  • Biological Unit Coordinates (3ol7.pdb2.gz) 190 Kb
  • Biological Unit Coordinates (3ol7.pdb3.gz) 191 Kb
  • Biological Unit Coordinates (3ol7.pdb4.gz) 192 Kb
  • LPC: Ligand-Protein Contacts for 3OL7
  • CSU: Contacts of Structural Units for 3OL7
  • Structure Factors (747 Kb)
  • Retrieve 3OL7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OL7 from S2C, [Save to disk]
  • Re-refined 3ol7 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OL7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OL7
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OL7, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ol7_M] [3ol7] [3ol7_D] [3ol7_H] [3ol7_L] [3ol7_A] [3ol7_I] [3ol7_N] [3ol7_P] [3ol7_E] [3ol7_C] [3ol7_B] [3ol7_J] [3ol7_F] [3ol7_O] [3ol7_K] [3ol7_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OL7
  • Community annotation for 3OL7 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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