3OLF	Hormone Receptor	date	Aug 26, 2010
title	Crystal Structure Of Human Fxr In Complex With 4-({(2s)-2-[2 Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2- Cyclohexylacetyl}Amino)-3-Methylbenzoic Acid
authors	M.G.Rudolph
compound		source
Molecule: Bile Acid Receptor Chain: A, C Fragment: Unp Residues 258-486 Synonym: Fxr, Farnesoid X-Activated Receptor, Farnesol Rece 1, Nuclear Receptor Subfamily 1 Group H Member 4, Retinoid Receptor-Interacting Protein 14, Rxr-Interacting Protein 14 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h4, Hcg_20893 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Peptide Of Nuclear Receptor Coactivator 1 Chain: B, D Fragment: Unp Residues 744-757 Synonym: Ncoa-1, Class E Basic Helix-Loop-Helix Protein 74, Protein Hin-2, Rip160, Renal Carcinoma Antigen Ny-Ren-52, S Receptor Coactivator 1, Src-1; Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans
symmetry	Space Group: C 2 2 21	R_factor 0.205 R_Free 0.238
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.280 84.860 191.560 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.90 Å
ligand	OLF BindingDB	enzyme
Gene	HCG
Gene Ontology	Chain Function Process Component A, C
Primary reference	Optimization of a novel class of benzimidazole-based farnesoid X receptor (FXR) agonists to improve physicochemical and ADME properties., Richter HG, Benson GM, Bleicher KH, Blum D, Chaput E, Clemann N, Feng S, Gardes C, Grether U, Hartman P, Kuhn B, Martin RE, Plancher JM, Rudolph MG, Schuler F, Taylor S, Bioorg Med Chem Lett. 2011 Feb 15;21(4):1134-40. doi: 10.1016/j.bmcl.2010.12.123., Epub 2010 Dec 31. PMID:21269824

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (3olf.pdb1.gz) 44 Kb Biological Unit Coordinates (3olf.pdb2.gz) 43 Kb LPC: Ligand-Protein Contacts for 3OLF CSU: Contacts of Structural Units for 3OLF Structure Factors (741 Kb) Retrieve 3OLF in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OLF from S2C, [Save to disk] Re-refined 3olf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OLF in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OLF

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OLF, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3olf] [3olf_D] [3olf_B] [3olf_C] [3olf_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OLF: [HOLI ] by SMART

Other resources with information on 3OLF

Community annotation for 3OLF at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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