3OMM	Hormone Receptor	date	Aug 27, 2010
title	Crystal Structure Of Human Fxr In Complex With 4-({(2s)-2-[2 Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2- Cyclohexylacetyl}Amino)-3-Fluorobenzoic Acid
authors	M.G.Rudolph
compound		source
Molecule: Bile Acid Receptor Chain: A, C Fragment: Unp Residues 258-486 Synonym: Fxr, Farnesoid X-Activated Receptor, Farnesol Rece 1, Nuclear Receptor Subfamily 1 Group H Member 4, Retinoid Receptor-Interacting Protein 14, Rxr-Interacting Protein 14 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Nr1h4, Hcg_20893 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet28a
Molecule: Peptide Of Nuclear Receptor Coactivator 1 Chain: B, D Fragment: Unp Residues 744-757 Synonym: Ncoa-1, Class E Basic Helix-Loop-Helix Protein 74, Protein Hin-2, Rip160, Renal Carcinoma Antigen Ny-Ren-52, S Receptor Coactivator 1, Src-1; Engineered: Yes		Synthetic: Yes Other_details: This Sequence Occurs Naturally In Humans
symmetry	Space Group: C 2 2 21	R_factor 0.215 R_Free 0.256
crystal cell	length a length b length c angle alpha angle beta angle gamma 72.130 83.940 190.480 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand	OMM BindingDB	enzyme
Gene	HCG
Gene Ontology	Chain Function Process Component A, C
Primary reference	Optimization of a novel class of benzimidazole-based farnesoid X receptor (FXR) agonists to improve physicochemical and ADME properties., Richter HG, Benson GM, Bleicher KH, Blum D, Chaput E, Clemann N, Feng S, Gardes C, Grether U, Hartman P, Kuhn B, Martin RE, Plancher JM, Rudolph MG, Schuler F, Taylor S, Bioorg Med Chem Lett. 2011 Feb 15;21(4):1134-40. doi: 10.1016/j.bmcl.2010.12.123., Epub 2010 Dec 31. PMID:21269824

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk] Biological Unit Coordinates (3omm.pdb1.gz) 44 Kb Biological Unit Coordinates (3omm.pdb2.gz) 42 Kb LPC: Ligand-Protein Contacts for 3OMM CSU: Contacts of Structural Units for 3OMM Structure Factors (1559 Kb) Retrieve 3OMM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OMM from S2C, [Save to disk] Re-refined 3omm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OMM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OMM

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OMM, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3omm_A] [3omm_C] [3omm_D] [3omm_B] [3omm] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OMM: [HOLI ] by SMART

Other resources with information on 3OMM

Community annotation for 3OMM at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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