3OMW Hydrolase date Aug 27, 2010
title Crystal Structure Of Ssu72, An Essential Eukaryotic Phosphat Specific For The C-Terminal Domain Of Rna Polymerase II
authors Y.Zhang, M.Zhang, Y.Zhang
compound source
Molecule: Cg14216
Chain: A, B, C, D
Synonym: Ld40846p
Engineered: Yes
Organism_scientific: Drosophila Melanogaster
Organism_common: Fruit Fly
Organism_taxid: 7227
Gene: Cg14216, Dmel_cg14216
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28
symmetry Space Group: P 21 21 2
R_factor 0.222 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
158.100 101.929 65.645 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.87 Å
Gene DMEL
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II, in complex with a transition state analogue., Zhang Y, Zhang M, Zhang Y, Biochem J. 2011 Jan 5. PMID:21204787
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (127 Kb) [Save to disk]
  • Biological Unit Coordinates (3omw.pdb1.gz) 32 Kb
  • Biological Unit Coordinates (3omw.pdb2.gz) 32 Kb
  • Biological Unit Coordinates (3omw.pdb3.gz) 32 Kb
  • Biological Unit Coordinates (3omw.pdb4.gz) 32 Kb
  • CSU: Contacts of Structural Units for 3OMW
  • Structure Factors (580 Kb)
  • Retrieve 3OMW in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OMW from S2C, [Save to disk]
  • Re-refined 3omw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OMW in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OMW
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OMW, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3omw_D] [3omw_C] [3omw_A] [3omw] [3omw_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OMW
  • Community annotation for 3OMW at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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