3OOK Hormone Receptor date Aug 31, 2010
title Crystal Structure Of Human Fxr In Complex With 4-({(2s)-2-[2 Chlorophenyl)-5,6-Difluoro-1h-Benzimidazol-1-Yl]-2- Cyclohexylacetyl}Amino)-3,5-Difluorobenzoic Acid
authors M.G.Rudolph
compound source
Molecule: Bile Acid Receptor
Chain: A, C
Fragment: Unp Residues 258-486
Synonym: Fxr, Farnesoid X-Activated Receptor, Farnesol Rece 1, Nuclear Receptor Subfamily 1 Group H Member 4, Retinoid Receptor-Interacting Protein 14, Rxr-Interacting Protein 14
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nr1h4, Hcg_20893
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a

Molecule: Peptide Of Nuclear Receptor Coactivator 1
Chain: B, D
Fragment: Unp Residues 744-757
Synonym: Ncoa-1, Class E Basic Helix-Loop-Helix Protein 74, Protein Hin-2, Rip160, Renal Carcinoma Antigen Ny-Ren-52, S Receptor Coactivator 1, Src-1;
Engineered: Yes

Synthetic: Yes
Other_details: This Sequence Occurs Naturally In Humans
symmetry Space Group: C 2 2 21
R_factor 0.229 R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
72.477 83.288 190.007 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.29 Å
ligand OOK BindingDB enzyme
Gene HCG
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceOptimization of a novel class of benzimidazole-based farnesoid X receptor (FXR) agonists to improve physicochemical and ADME properties., Richter HG, Benson GM, Bleicher KH, Blum D, Chaput E, Clemann N, Feng S, Gardes C, Grether U, Hartman P, Kuhn B, Martin RE, Plancher JM, Rudolph MG, Schuler F, Taylor S, Bioorg Med Chem Lett. 2011 Feb 15;21(4):1134-40. doi: 10.1016/j.bmcl.2010.12.123., Epub 2010 Dec 31. PMID:21269824
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk]
  • Biological Unit Coordinates (3ook.pdb1.gz) 44 Kb
  • Biological Unit Coordinates (3ook.pdb2.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 3OOK
  • CSU: Contacts of Structural Units for 3OOK
  • Structure Factors (456 Kb)
  • Retrieve 3OOK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OOK from S2C, [Save to disk]
  • Re-refined 3ook structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OOK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OOK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OOK, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ook_B] [3ook] [3ook_A] [3ook_D] [3ook_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OOK: [HOLI ] by SMART
  • Other resources with information on 3OOK
  • Community annotation for 3OOK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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