3OOU Structural Genomics, Unknown Function date Aug 31, 2010
title The Structure Of A Protein With Unkown Function From Listeri
authors Y.Fan, J.Mack, B.Feldman, A.Joachimiak, Midwest Center For Struc Genomics (Mcsg)
compound source
Molecule: Lin2118 Protein
Chain: A
Engineered: Yes
Organism_scientific: Listeria Innocua
Organism_taxid: 1642
Gene: Lin2118
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 31 2 1
R_factor 0.192 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.891 51.891 75.384 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.57 Å
ligand BTB, EDO, MSE enzyme
note 3OOU is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (3oou.pdb1.gz) 44 Kb
  • LPC: Ligand-Protein Contacts for 3OOU
  • CSU: Contacts of Structural Units for 3OOU
  • Structure Factors (230 Kb)
  • Retrieve 3OOU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OOU from S2C, [Save to disk]
  • Re-refined 3oou structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OOU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OOU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OOU, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oou] [3oou_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OOU: [HTH_ARAC ] by SMART
  • Other resources with information on 3OOU
  • Community annotation for 3OOU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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