3OP0 Signaling Protein Signaling Protein Regu date Aug 31, 2010
title Crystal Structure Of Cbl-C (Cbl-3) Tkb Domain In Complex Wit Py1069 Peptide
authors A.Chaikuad, K.Guo, C.D.O.Cooper, V.Ayinampudi, T.Krojer, E.Ugochu J.R.C.Muniz, M.Vollmar, P.Canning, F.Von Delft, C.H.Arrowsmith, J.Weigelt, A.M.Edwards, C.Bountra, A.Bullock, Structural Genomi Consortium (Sgc)
compound source
Molecule: Signal Transduction Protein Cbl-C
Chain: A, B
Fragment: Cbl N-Terminal, Unp Residues 9-323
Synonym: Sh3-Binding Protein Cbl-C, Sh3-Binding Protein Cbl Finger Protein 57;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cbl3, Cblc, Rnf57
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)-R3-Prare2
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pnic-Cthf

Molecule: Epidermal Growth Factor Receptor
Chain: C, D
Fragment: Egfr, Unp Residues 1066-1076
Synonym: Receptor Tyrosine-Protein Kinase Erbb-1, Proto-Onc Erbb-1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 65
R_factor 0.214 R_Free 0.266
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.250 90.250 191.581 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.52 Å
ligand CSD, CSO, NA, NI, PTR enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (229 Kb) [Save to disk]
  • Biological Unit Coordinates (3op0.pdb1.gz) 111 Kb
  • Biological Unit Coordinates (3op0.pdb2.gz) 111 Kb
  • Biological Unit Coordinates (3op0.pdb3.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 3OP0
  • CSU: Contacts of Structural Units for 3OP0
  • Structure Factors (473 Kb)
  • Retrieve 3OP0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OP0 from S2C, [Save to disk]
  • Re-refined 3op0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OP0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OP0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OP0, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3op0] [3op0_D] [3op0_B] [3op0_A] [3op0_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OP0
  • Community annotation for 3OP0 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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