3OPS Isomerase date Sep 01, 2010
title Crystal Structure Of Mandelate Racemasemuconate Lactonizing From Geobacillus Sp. Y412mc10 Complexed With Magnesiumtart
authors V.N.Malashkevich, Y.Patskovsky, U.Ramagopal, R.Toro, J.M.Sauder, S.K.Burley, S.C.Almo, New York Sgx Research Center For Struct Genomics (Nysgxrc)
compound source
Molecule: Mandelate Racemasemuconate Lactonizing Protein
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Geobacillus Sp.
Organism_taxid: 481743
Strain: Y412mc10
Gene: 192811615, Gymc10_3367
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)Codon+Ril
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Bc-Psgx3(Bc)
symmetry Space Group: C 1 2 1
R_factor 0.228 R_Free 0.311
crystal
cell
length a length b length c angle alpha angle beta angle gamma
159.989 66.375 154.854 90.00 96.59 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand MG, MSE, TAR enzyme
Gene GYMC10
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (529 Kb) [Save to disk]
  • Biological Unit Coordinates (3ops.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (3ops.pdb2.gz) 136 Kb
  • Biological Unit Coordinates (3ops.pdb3.gz) 136 Kb
  • Biological Unit Coordinates (3ops.pdb4.gz) 128 Kb
  • Biological Unit Coordinates (3ops.pdb5.gz) 268 Kb
  • Biological Unit Coordinates (3ops.pdb6.gz) 258 Kb
  • LPC: Ligand-Protein Contacts for 3OPS
  • CSU: Contacts of Structural Units for 3OPS
  • Structure Factors (1082 Kb)
  • Retrieve 3OPS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OPS from S2C, [Save to disk]
  • Re-refined 3ops structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OPS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OPS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OPS, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ops_A] [3ops_B] [3ops] [3ops_C] [3ops_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OPS: [MR_MLE ] by SMART
  • Other resources with information on 3OPS
  • Community annotation for 3OPS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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