3ORL Transferase date Sep 07, 2010
title Mycobacterium Tuberculosis Pknb Kinase Domain L33d Mutant (C Form 3)
authors N.Echols, T.N.Lombana, N.D.Thomsen, H.L.Ng, T.Alber, Tb Structur Genomics Consortium (Tbsgc)
compound source
Molecule: Serinethreonine Protein Kinase
Chain: A
Fragment: Kinase Domain (Unp Residues 1 To 308)
Engineered: Yes
Mutation: Yes
 Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 419947
Strain: H37rv
Gene: Mra_0016, Pknb, Pknb (Rv0014c)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.211 R_Free 0.277
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.191 50.633 132.762 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand AGS, MN enzyme
Gene MRA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (81 Kb) [Save to disk]
  • Biological Unit Coordinates (3orl.pdb1.gz) 75 Kb
  • LPC: Ligand-Protein Contacts for 3ORL
  • CSU: Contacts of Structural Units for 3ORL
  • Structure Factors (47 Kb)
  • Retrieve 3ORL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ORL from S2C, [Save to disk]
  • Re-refined 3orl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 3ORL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 3ORL
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ORL, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3orl_A] [3orl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ORL: [S_TKc ] by SMART
    • Other resources with information on 3ORL
  • Community annotation for 3ORL at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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