3ORM Transferase date Sep 07, 2010
title Mycobacterium Tuberculosis Pknb Kinase Domain D76a Mutant
authors N.Echols, T.N.Lombana, T.Alber, Tb Structural Genomics Consorti (Tbsgc)
compound source
Molecule: Serinethreonine Protein Kinase
Chain: A
Fragment: Kinase Domain (Unp Residues 1 To 308)
Engineered: Yes
Mutation: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 419947
Strain: H37rv
Gene: Mra_0016, Pknb, Pknb (Rv0014c)
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21+
Expression_system_plasmid: Pet28b
symmetry Space Group: P 21 21 21
R_factor 0.215 R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.458 51.076 134.746 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand AGS, MN enzyme
Gene MRA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAllosteric activation mechanism of the Mycobacterium tuberculosis receptor Ser/Thr protein kinase, PknB., Lombana TN, Echols N, Good MC, Thomsen ND, Ng HL, Greenstein AE, Falick AM, King DS, Alber T, Structure. 2010 Dec 8;18(12):1667-77. doi: 10.1016/j.str.2010.09.019. PMID:21134645
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3orm.pdb1.gz) 85 Kb
  • LPC: Ligand-Protein Contacts for 3ORM
  • CSU: Contacts of Structural Units for 3ORM
  • Structure Factors (113 Kb)
  • Retrieve 3ORM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3ORM from S2C, [Save to disk]
  • Re-refined 3orm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3ORM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3ORM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3ORM, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3orm_A] [3orm]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3ORM: [STYKc ] by SMART
  • Other resources with information on 3ORM
  • Community annotation for 3ORM at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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