3OUI Oxidoreductase date Sep 14, 2010
title Phd2-R717 With 40787422
authors T.L.Arakaki, H.Kim
compound source
Molecule: Egl Nine Homolog 1
Chain: A
Synonym: Hypoxia-Inducible Factor Prolyl Hydroxylase 2, Hif Hydroxylase 2, Hif-Ph2, Hph-2, Prolyl Hydroxylase Domain-Co Protein 2, Phd2, Sm-20;
Ec: 1.14.11.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egln1, C1orf12, Pnas-118, Pnas-137
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pbad-Smt
symmetry Space Group: P 21 21 21
R_factor 0.188 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.006 67.795 79.092 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand 42Z, ACT, FE2, PEG BindingDB enzyme Oxidoreductase E.C.1.14.11 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBenzimidazole-2-pyrazole HIF Prolyl 4-Hydroxylase Inhibitors as Oral Erythropoietin Secretagogues., Rosen MD, Venkatesan H, Peltier HM, Bembenek SD, Kanelakis KC, Zhao LX, Leonard BE, Hocutt FM, Wu X, Palomino HL, Brondstetter TI, Haugh PV, Cagnon L, Yan W, Liotta LA, Young A, Mirzadegan T, Shankley NP, Barrett TD, Rabinowitz MH, ACS Med Chem Lett. 2010 Oct 5;1(9):526-9. doi: 10.1021/ml100198y. eCollection, 2010 Dec 9. PMID:24900242
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (39 Kb) [Save to disk]
  • Biological Unit Coordinates (3oui.pdb1.gz) 35 Kb
  • LPC: Ligand-Protein Contacts for 3OUI
  • CSU: Contacts of Structural Units for 3OUI
  • Structure Factors (351 Kb)
  • Retrieve 3OUI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OUI from S2C, [Save to disk]
  • Re-refined 3oui structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OUI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OUI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OUI, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3oui_A] [3oui]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OUI: [P4Hc ] by SMART
  • Other resources with information on 3OUI
  • Community annotation for 3OUI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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