3OVE Signaling Protein Antagonist date Sep 16, 2010
title Crystal Structure Of The Grb2 Sh2 Domain In Complex With A P Derived Tripeptide
authors J.H.Clements, S.F.Martin
compound source
Molecule: Growth Factor Receptor-Bound Protein 2
Chain: A
Fragment: Unp Residues 53-163
Synonym: Adapter Protein Grb2, Protein Ash, Sh2sh3 Adapter
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Strain: Sg13009
Gene: Ash, Grb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Sg13009
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe-60

Molecule: Pyac7cn
Chain: B
Engineered: Yes

Synthetic: Yes
symmetry Space Group: P 43 21 2
R_factor 0.177 R_Free 0.260
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.935 41.935 108.971 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.82 Å
ligand 03E, ACT, CL, NH2, PTR enzyme
Primary referenceProtein-Ligand Interactions: Thermodynamic Effects Associated with Increasing Nonpolar Surface Area., Myslinski JM, Delorbe JE, Clements JH, Martin SF, J Am Chem Soc. 2011 Oct 27. PMID:22007755
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (26 Kb) [Save to disk]
  • Biological Unit Coordinates (3ove.pdb1.gz) 21 Kb
  • Biological Unit Coordinates (3ove.pdb2.gz) 40 Kb
  • LPC: Ligand-Protein Contacts for 3OVE
  • CSU: Contacts of Structural Units for 3OVE
  • Structure Factors (125 Kb)
  • Retrieve 3OVE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OVE from S2C, [Save to disk]
  • Re-refined 3ove structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OVE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OVE
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OVE, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3ove_B] [3ove_A] [3ove]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3OVE: [SH2 ] by SMART
  • Other resources with information on 3OVE
  • Community annotation for 3OVE at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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