3OWG Transferase date Sep 17, 2010
title Crystal Structure Of Vaccinia Virus Polyadenylate Polymerase
authors C.Li, H.Li, S.Zhou, P.D.Gershon, T.L.Poulos
compound source
Molecule: Poly(A) Polymerase Catalytic Subunit
Chain: A, B
Synonym: Poly(A) Polymerase Large Subunit, Pap-L, Vp55
Ec: 2.7.7.19
Engineered: Yes
Organism_scientific: Vaccinia Virus Wr
Organism_common: Vacv
Organism_taxid: 10254
Strain: Western Reserve
Gene: Papl, Vacwr057, E1l
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta(De3)Plyss
Expression_system_vector_type: Pet-15b
Expression_system_plasmid: Ppg198
symmetry Space Group: P 21 21 2
R_factor 0.253 R_Free 0.316
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.128 161.290 97.672 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.86 Å
ligand
enzyme Transferase E.C.2.7.7.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceDomain-level rocking motion within a polymerase that translocates on single-stranded nucleic acid., Li H, Li C, Zhou S, Poulos TL, Gershon PD, Acta Crystallogr D Biol Crystallogr. 2013 Apr;69(Pt 4):617-24. doi:, 10.1107/S0907444913000346. Epub 2013 Mar 14. PMID:23519670
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (142 Kb) [Save to disk]
  • Biological Unit Coordinates (3owg.pdb1.gz) 70 Kb
  • Biological Unit Coordinates (3owg.pdb2.gz) 70 Kb
  • CSU: Contacts of Structural Units for 3OWG
  • Structure Factors (233 Kb)
  • Retrieve 3OWG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OWG from S2C, [Save to disk]
  • Re-refined 3owg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OWG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OWG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OWG, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3owg] [3owg_B] [3owg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OWG
  • Community annotation for 3OWG at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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