3OWO Oxidoreductase date Sep 20, 2010
title Structures Of Iron-Dependent Alcohol Dehydrogenase 2 From Zy Mobilis Zm4 With And Without Nad Cofactor
authors J.H.Moon, H.J.Lee, J.M.Song, S.Y.Park, M.Y.Park, H.M.Park, J.Sun, J J.S.Kim
compound source
Molecule: Alcohol Dehydrogenase 2
Chain: A, B, C, D
Synonym: Alcohol Dehydrogenase II, Adh II
Ec: 1.1.1.1
Engineered: Yes
Organism_scientific: Zymomonas Mobilis
Organism_taxid: 542
Strain: Zm4
Gene: Adhb, Zmo1596
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.202 R_Free 0.253
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.917 87.510 124.708 90.00 94.70 90.00
method X-Ray Diffractionresolution 2.07 Å
ligand FE2 enzyme Oxidoreductase E.C.1.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructures of iron-dependent alcohol dehydrogenase 2 from Zymomonas mobilis ZM4 with and without NAD+ cofactor., Moon JH, Lee HJ, Park SY, Song JM, Park MY, Park HM, Sun J, Park JH, Kim BY, Kim JS, J Mol Biol. 2011 Apr 1;407(3):413-24. doi: 10.1016/j.jmb.2011.01.045. Epub 2011, Feb 3. PMID:21295587
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (241 Kb) [Save to disk]
  • Biological Unit Coordinates (3owo.pdb1.gz) 120 Kb
  • Biological Unit Coordinates (3owo.pdb2.gz) 119 Kb
  • LPC: Ligand-Protein Contacts for 3OWO
  • CSU: Contacts of Structural Units for 3OWO
  • Structure Factors (761 Kb)
  • Retrieve 3OWO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3OWO from S2C, [Save to disk]
  • Re-refined 3owo structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3OWO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3OWO
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3OWO, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3owo_A] [3owo_D] [3owo] [3owo_B] [3owo_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3OWO
  • Community annotation for 3OWO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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