3OY6	Hydrolase Hydrolase Inhibitor	date	Sep 22, 2010
title	The Crystal Structure Of Upa Complex With Peptide Inhibitor Ph4.6
authors	L.G.Jiang, P.A.Andreasen, M.D.Huang
compound		source
Molecule: Urokinase-Type Plasminogen Activator Chain: U Fragment: C-Terminal Domain, Unp Residues 179-431 Synonym: U-Plasminogen Activator, Upa, Urokinase-Type Plasm Activator Long Chain A, Urokinase-Type Plasminogen Activato Chain A, Urokinase-Type Plasminogen Activator Chain B; Ec: 3.4.21.73 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Plau Expression_system: Pichia Pastoris Expression_system_taxid: 4922 Expression_system_strain: X33 Expression_system_vector_type: Plasmid Expression_system_plasmid: Ppiczalphaa
Molecule: Mh036 Chain: P Engineered: Yes		Synthetic: Yes Other_details: This Peptide Was Chemically Synthesized By S Phase Synthesis And Purified By Reverse Phase Hplc
symmetry	Space Group: H 3	R_factor 0.181 R_Free 0.263
crystal cell	length a length b length c angle alpha angle beta angle gamma 121.091 121.091 43.332 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.31 Å
ligand		enzyme	Hydrolase E.C.3.4.21.73 BRENDA
Gene Ontology	Chain Function Process Component U
Primary reference	The binding mechanism of a peptidic cyclic serine protease inhibitor., Jiang L, Svane AS, Sorensen HP, Jensen JK, Hosseini M, Chen Z, Weydert C, Nielsen JT, Christensen A, Yuan C, Jensen KJ, Nielsen NC, Malmendal A, Huang M, Andreasen PA, J Mol Biol. 2011 Sep 16;412(2):235-50. Epub 2011 Jul 23. PMID:21802428

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk] Biological Unit Coordinates (3oy6.pdb1.gz) 44 Kb CSU: Contacts of Structural Units for 3OY6 Structure Factors (163 Kb) Retrieve 3OY6 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3OY6 from S2C, [Save to disk] Re-refined 3oy6 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3OY6 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3OY6

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3OY6, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3oy6_P] [3oy6_U] [3oy6] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 3OY6: [Tryp_SPc ] by SMART

Other resources with information on 3OY6

Community annotation for 3OY6 at PDBWiki (http://pdbwiki.org)

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