3P0G Signaling Protein, Hydrolase date Sep 28, 2010
title Structure Of A Nanobody-Stabilized Active State Of The Beta2 Adrenoceptor
authors S.G.F.Rasmussen, H.J.Choi, J.J.Fung, E.Pardon, P.Casarosa, P.S.C B.T.Devree, D.M.Rosenbaum, F.S.Thian, T.S.Kobilka, A.Schnapp, I. R.K.Sunahara, S.H.Gellman, A.Pautsch, J.Steyaert, W.I.Weis, B.K.
compound source
Molecule: Beta-2 Adrenergic Receptor, Lysozyme
Chain: A
Fragment: Unp P07550 Residues 1-230, 263-365, Unp P00720 Re 161;
Synonym: Endolysin, Lysis Protein, Muramidase
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Other_details: Beta-2-Adrenergic Receptort4-Lysozyme Chime
Organism_scientific: Homo Sapiens, Enterobacteria Phage T4
Organism_common: Human, Bacteriophage T4
Organism_taxid: 9606, 10665
Gene: Adrb2, Adrb2r, B2ar, E
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Camelid Antibody Fragment
Chain: B
Engineered: Yes
Other_details: Nanobody

Organism_scientific: Lama Glama
Organism_taxid: 9844
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.308
crystal
cell
length a length b length c angle alpha angle beta angle gamma
236.686 45.660 71.375 90.00 102.34 90.00
method X-Ray Diffractionresolution 3.50 Å
ligand P0G enzyme Hydrolase E.C.3.2.1.17 BRENDA
note 3P0G (Molecule of the Month:pdb136)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of a nanobody-stabilized active state of the beta(2) adrenoceptor., Rasmussen SG, Choi HJ, Fung JJ, Pardon E, Casarosa P, Chae PS, Devree BT, Rosenbaum DM, Thian FS, Kobilka TS, Schnapp A, Konetzki I, Sunahara RK, Gellman SH, Pautsch A, Steyaert J, Weis WI, Kobilka BK, Nature. 2011 Jan 13;469(7329):175-80. PMID:21228869
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (71 Kb) [Save to disk]
  • Biological Unit Coordinates (3p0g.pdb1.gz) 65 Kb
  • LPC: Ligand-Protein Contacts for 3P0G
  • CSU: Contacts of Structural Units for 3P0G
  • Structure Factors (147 Kb)
  • Retrieve 3P0G in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P0G from S2C, [Save to disk]
  • Re-refined 3p0g structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P0G in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P0G
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P0G, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p0g_A] [3p0g_B] [3p0g]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P0G: [IGv ] by SMART
  • Other resources with information on 3P0G
  • Community annotation for 3P0G at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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