3P0X Lyase date Sep 29, 2010
title Crystal Structure Of Isocitrate Lyase From Brucella Melitens To Magnesium Isocitrate
authors Seattle Structural Genomics Center For Infectious Disease (S
compound source
Molecule: Isocitrate Lyase
Chain: A, B, C, D
Synonym: Acea
Ec: 4.1.3.1
Engineered: Yes
Organism_scientific: Brucella Melitensis Biovar Abortus
Organism_taxid: 359391
Strain: 2308
Gene: Acea, Bab1_1631, Bruab1_1601
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ava0421
symmetry Space Group: P 21 21 21
R_factor 0.178 R_Free 0.230
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.910 135.930 181.790 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.35 Å
ligand EDO, ICT, MG enzyme Lyase E.C.4.1.3.1 BRENDA
Gene BAB1 ; BRUAB1
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (536 Kb) [Save to disk]
  • Biological Unit Coordinates (3p0x.pdb1.gz) 529 Kb
  • LPC: Ligand-Protein Contacts for 3P0X
  • CSU: Contacts of Structural Units for 3P0X
  • Structure Factors (1228 Kb)
  • Retrieve 3P0X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P0X from S2C, [Save to disk]
  • Re-refined 3p0x structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P0X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P0X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P0X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p0x] [3p0x_C] [3p0x_B] [3p0x_D] [3p0x_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3P0X
  • Community annotation for 3P0X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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