3P0Y	Immune System	date	Sep 29, 2010
title	Anti-Egfrher3 Fab Dl11 In Complex With Domain III Of Egfr Extracellular Region
authors	C.Eigenbrot, S.Shia
compound		source
Molecule: Epidermal Growth Factor Receptor Chain: A Fragment: Domain III, Unp Residues 334-540 Synonym: Receptor Tyrosine-Protein Kinase Erbb-1, Proto-Onc Erbb-1; Ec: 2.7.10.1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Egfr, Erbb1 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108
Molecule: Fab Dl11 Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pw0579-3
Molecule: Fab Dl11 Light Chain Chain: L Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pw0579-3
symmetry	Space Group: P 21 21 2	R_factor 0.181 R_Free 0.215
crystal cell	length a length b length c angle alpha angle beta angle gamma 81.934 200.677 49.426 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	FUL, GOL, NAG	enzyme	Transferase E.C.2.7.10.1 BRENDA
Primary reference	A two-in-one antibody against HER3 and EGFR has superior inhibitory activity compared with monospecific antibodies., Schaefer G, Haber L, Crocker LM, Shia S, Shao L, Dowbenko D, Totpal K, Wong A, Lee CV, Stawicki S, Clark R, Fields C, Lewis Phillips GD, Prell RA, Danilenko DM, Franke Y, Stephan JP, Hwang J, Wu Y, Bostrom J, Sliwkowski MX, Fuh G, Eigenbrot C, Cancer Cell. 2011 Oct 18;20(4):472-86. PMID:22014573

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (117 Kb) [Save to disk] Biological Unit Coordinates (3p0y.pdb1.gz) 112 Kb LPC: Ligand-Protein Contacts for 3P0Y CSU: Contacts of Structural Units for 3P0Y Structure Factors (960 Kb) Retrieve 3P0Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P0Y from S2C, [Save to disk] Re-refined 3p0y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P0Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P0Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P0Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p0y_L] [3p0y] [3p0y_A] [3p0y_H] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3P0Y: [FU] [IG_like] [IGv ] by SMART

Other resources with information on 3P0Y

Community annotation for 3P0Y at PDBWiki (http://pdbwiki.org)

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