3P2Y	Oxidoreductase	date	Oct 04, 2010
title	Crystal Structure Of Alanine Dehydrogenasepyridine Nucleoti Transhydrogenase From Mycobacterium Smegmatis
authors	Seattle Structural Genomics Center For Infectious Disease (S
compound		source
Molecule: Alanine Dehydrogenasepyridine Nucleotide Transhy Chain: A Ec: 1.4.1.1 Engineered: Yes		Organism_scientific: Mycobacterium Smegmatis Str. Mc2 155 Organism_taxid: 246196 Strain: Atcc 700084 Mc(2)155 Gene: Msmeg_0152 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_vector_type: Ava0421
symmetry	Space Group: P 61 2 2	R_factor 0.165 R_Free 0.196
crystal cell	length a length b length c angle alpha angle beta angle gamma 89.760 89.760 179.570 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.82 Å
ligand	CA, EDO, NA	enzyme	Oxidoreductase E.C.1.4.1.1 BRENDA
Gene	MSMEG
Gene Ontology	Chain Function Process Component A
Primary reference	Increasing the structural coverage of tuberculosis drug targets., Baugh L, Phan I, Begley DW, Clifton MC, Armour B, Dranow DM, Taylor BM, Muruthi MM, Abendroth J, Fairman JW, Fox D 3rd, Dieterich SH, Staker BL, Gardberg AS, Choi R, Hewitt SN, Napuli AJ, Myers J, Barrett LK, Zhang Y, Ferrell M, Mundt E, Thompkins K, Tran N, Lyons-Abbott S, Abramov A, Sekar A, Serbzhinskiy D, Lorimer D, Buchko GW, Stacy R, Stewart LJ, Edwards TE, Van Voorhis WC, Myler PJ, Tuberculosis (Edinb). 2014 Dec 19. pii: S1472-9792(14)20565-8. doi:, 10.1016/j.tube.2014.12.003. PMID:25613812

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk] Biological Unit Coordinates (3p2y.pdb1.gz) 227 Kb LPC: Ligand-Protein Contacts for 3P2Y CSU: Contacts of Structural Units for 3P2Y Structure Factors (554 Kb) Retrieve 3P2Y in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 3P2Y from S2C, [Save to disk] Re-refined 3p2y structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 3P2Y in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 3P2Y

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 3P2Y, from MSDmotif at EBI

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [3p2y] [3p2y_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 3P2Y: [AlaDh_PNT_C] [AlaDh_PNT_N ] by SMART

Other resources with information on 3P2Y

Community annotation for 3P2Y at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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