3P42 Unknown Function date Oct 05, 2010
title Structure Of Gfcc (Ymcb), Protein Encoded By The E. Coli Gro Capsule Operon
authors M.A.Saper, K.Sathiyamoorthy
compound source
Molecule: Predicted Protein
Chain: A, B, C, D
Fragment: Unp Residues 22-248
Engineered: Yes
Organism_scientific: Escherichia Coli O127:H6
Organism_taxid: 574521
Strain: E234869
Gene: E2348c_0970, E2348_c_0970, Gfcc
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Tuner(De3) Placi
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Petblue2
symmetry Space Group: P 1 21 1
R_factor 0.173 R_Free 0.217
crystal
cell
length a length b length c angle alpha angle beta angle gamma
68.831 99.980 69.020 90.00 91.74 90.00
method X-Ray Diffractionresolution 1.91 Å
ligand MSE, SO4 enzyme
note 3P42 is a representative structure
Gene E2348C ; E2348 (C. caroliniana)
Primary referenceThe Crystal Structure of Escherichia coli Group 4 Capsule Protein GfcC Reveals a Domain Organization Resembling That of Wza., Sathiyamoorthy K, Mills E, Franzmann TM, Rosenshine I, Saper MA, Biochemistry. 2011 Jun 21;50(24):5465-76. Epub 2011 May 27. PMID:21449614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (455 Kb) [Save to disk]
  • Biological Unit Coordinates (3p42.pdb1.gz) 117 Kb
  • Biological Unit Coordinates (3p42.pdb2.gz) 112 Kb
  • Biological Unit Coordinates (3p42.pdb3.gz) 113 Kb
  • Biological Unit Coordinates (3p42.pdb4.gz) 114 Kb
  • Biological Unit Coordinates (3p42.pdb5.gz) 226 Kb
  • Biological Unit Coordinates (3p42.pdb6.gz) 225 Kb
  • LPC: Ligand-Protein Contacts for 3P42
  • CSU: Contacts of Structural Units for 3P42
  • Structure Factors (975 Kb)
  • Retrieve 3P42 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P42 from S2C, [Save to disk]
  • Re-refined 3p42 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P42 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P42
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P42, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p42] [3p42_D] [3p42_C] [3p42_A] [3p42_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 3P42
  • Community annotation for 3P42 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science