3P57 Transferase Transcription Activator Dna date Oct 08, 2010
title Crystal Structure Of The P300 Taz2 Domain Bound To Mef2 On D
authors J.He, J.Ye, C.Riquelme, J.O.Liu
compound source
Molecule: Myocyte-Specific Enhancer Factor 2a
Chain: A, B, C, D, I, J
Fragment: N Terminal Domain (Unp Residues 2-91)
Synonym: Serum Response Factor-Like Protein 1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mef2, Mef2a
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30b

Molecule: Dna (5'-D(Aapapcptpaptptptpaptpapap
Chain: E, G, K
Fragment: Ch3 Domain (Unp Residues 1721-1837)
Engineered: Yes
Mutation: Yes
Other_details: Mef2 Binding Site

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Chemical Synthesis

Molecule: Dna (5'-D(Tptpcptptpaptpapapaptpapgp 3');
Chain: F, H, L
Engineered: Yes
Other_details: Mef2 Binding Site

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Chemical Synthesis

Molecule: Histone Acetyltransferase P300
Chain: P
Synonym: P300 Hat, E1a-Associated Protein P300
Ec: 2.3.1.48
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ep300, P300
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 21 21 21
R_factor 0.219 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
74.846 90.926 144.802 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.19 Å
ligand ZN enzyme Transferase E.C.2.3.1.48 BRENDA
note 3P57 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A, J, D, C, I, B


Primary referenceStructure of p300 bound to MEF2 on DNA reveals a mechanism of enhanceosome assembly., He J, Ye J, Cai Y, Riquelme C, Liu JO, Liu X, Han A, Chen L, Nucleic Acids Res. 2011 May;39(10):4464-74. Epub 2011 Jan 29. PMID:21278418
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (152 Kb) [Save to disk]
  • Biological Unit Coordinates (3p57.pdb1.gz) 146 Kb
  • LPC: Ligand-Protein Contacts for 3P57
  • CSU: Contacts of Structural Units for 3P57
  • Structure Factors (699 Kb)
  • Retrieve 3P57 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P57 from S2C, [Save to disk]
  • Re-refined 3p57 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P57 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P57
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P57, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p57] [3p57_I] [3p57_K] [3p57_L] [3p57_C] [3p57_G] [3p57_D] [3p57_A] [3p57_P] [3p57_J] [3p57_H] [3p57_F] [3p57_E] [3p57_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 3P57: [MADS] [ZnF_TAZ ] by SMART
  • Other resources with information on 3P57
  • Community annotation for 3P57 at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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