3P5A Lyase Inhibitor date Oct 08, 2010
title Human Carbonic Anhydrase Complexed With Sodium Morpholinocarbodithioate
authors M.Aggarwal, R.Mckenna
compound source
Molecule: Carbonic Anhydrase 2
Chain: A
Synonym: Carbonate Dehydratase II, Carbonic Anhydrase C, Ca Carbonic Anhydrase II, Ca-II;
Ec: 4.2.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ca2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3) Plyss
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.148 R_Free 0.169
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.262 41.210 72.151 90.00 104.21 90.00
method X-Ray Diffractionresolution 1.49 Å
ligand DMS, IT2, ZN enzyme Lyase E.C.4.2.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDithiocarbamates strongly inhibit carbonic anhydrases and show antiglaucoma action in vivo., Carta F, Aggarwal M, Maresca A, Scozzafava A, McKenna R, Masini E, Supuran CT, J Med Chem. 2012 Feb 23;55(4):1721-30. Epub 2012 Feb 13. PMID:22276570
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk]
  • Biological Unit Coordinates (3p5a.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 3P5A
  • CSU: Contacts of Structural Units for 3P5A
  • Structure Factors (488 Kb)
  • Retrieve 3P5A in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 3P5A from S2C, [Save to disk]
  • Re-refined 3p5a structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 3P5A in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 3P5A
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 3P5A, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [3p5a_A] [3p5a]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 3P5A: [Carb_anhydrase ] by SMART
  • Other resources with information on 3P5A
  • Community annotation for 3P5A at PDBWiki (http://pdbwiki.org)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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